{
  "_id": "6a1edfbcb401979e7341067a",
  "Package": "kindisperse",
  "Title": "Simulate and Estimate Close-Kin Dispersal Kernels",
  "Version": "0.10.3",
  "Authors@R": "person(given = \"Moshe-Elijah\",\nfamily = \"Jasper\",\nrole = c(\"aut\", \"cre\"),\nemail = \"moshe.jasper@unimelb.edu.au\",\ncomment = c(ORCID = \"0000-0003-4541-3223\"))",
  "Description": "Functions for simulating and estimating kinship-related\ndispersal. Based on the methods described in M. Jasper, T.L.\nSchmidt., N.W. Ahmad, S.P. Sinkins & A.A. Hoffmann (2019)\n<doi:10.1111/1755-0998.13043> \"A genomic approach to inferring\nkinship reveals limited intergenerational dispersal in the\nyellow fever mosquito\". Assumes an additive variance model of\ndispersal in two dimensions, compatible with Wright's\nneighbourhood area. Simple and composite dispersal simulations\nare supplied, as well as the functions needed to estimate\nparent-offspring dispersal for simulated or empirical data, and\nto undertake sampling design for future field studies of\ndispersal. For ease of use an integrated Shiny app is also\nincluded.",
  "License": "MIT + file LICENSE",
  "Encoding": "UTF-8",
  "LazyData": "true",
  "URL": "https://github.com/moshejasper/kindisperse",
  "Roxygen": "list(markdown = TRUE)",
  "RoxygenNote": "7.3.2",
  "VignetteBuilder": "knitr",
  "Collate": "'DispersalModel.R' 'KinPairData.R' 'dispersal_model.R'\n'KinPairSimulation.R' 'app.R' 'app_ports.R'\n'axial_helper_functions.R' 'axials_standard.R' 'data.R'\n'export_functions.R' 'import_kinpairs.R'\n'kindisperse-package.R' 'sample_kindist.R' 'simgraph_data.R'\n'simgraph_graph.R' 'simulate_kindist_composite.R'\n'simulate_kindist_custom.R' 'simulate_kindist_simple.R'",
  "Config/pak/sysreqs": "cmake make libicu-dev libuv1-dev libx11-dev\nzlib1g-dev",
  "Repository": "https://moshejasper.r-universe.dev",
  "Date/Publication": "2024-10-21 01:43:23 UTC",
  "RemoteUrl": "https://github.com/moshejasper/kindisperse",
  "RemoteRef": "HEAD",
  "RemoteSha": "6a9cb4b59d881418aa271d42785d02abc0b5a9cd",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-05-20 07:33:58 UTC",
    "User": "root"
  },
  "Author": "Moshe-Elijah Jasper [aut, cre] (ORCID:\n<https://orcid.org/0000-0003-4541-3223>)",
  "Maintainer": "Moshe-Elijah Jasper <moshe.jasper@unimelb.edu.au>",
  "MD5sum": "6baed342c95e29f28944f88c4caeab14",
  "_user": "moshejasper",
  "_type": "src",
  "_file": "kindisperse_0.10.3.tar.gz",
  "_fileid": "ee1d7c4d56b55257195c747d0eec8df5dca6b33abb8df071ab994d225aa38ad3",
  "_filesize": 1736428,
  "_sha256": "ee1d7c4d56b55257195c747d0eec8df5dca6b33abb8df071ab994d225aa38ad3",
  "_created": "2026-05-20T07:33:58.000Z",
  "_published": "2026-06-02T13:50:51.993Z",
  "_distro": "noble",
  "_jobs": [
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      "job": 79086317855,
      "time": 167,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
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  "_buildurl": "https://github.com/r-universe/moshejasper/actions/runs/26148130614",
  "_status": "success",
  "_host": "GitHub-Actions",
  "_upstream": "https://github.com/moshejasper/kindisperse",
  "_commit": {
    "id": "6a9cb4b59d881418aa271d42785d02abc0b5a9cd",
    "author": "Moshe Jasper <54789898+moshejasper@users.noreply.github.com>",
    "committer": "GitHub <noreply@github.com>",
    "message": "Update r_check_standard.yml",
    "time": 1729475003
  },
  "_maintainer": {
    "name": "Moshe-Elijah Jasper",
    "email": "moshe.jasper@unimelb.edu.au",
    "login": "moshejasper",
    "orcid": "0000-0003-4541-3223",
    "description": "I'm a PhD student focused on population genetics at the University of Melbourne",
    "uuid": 54789898
  },
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 2.10",
      "role": "Depends"
    },
    {
      "package": "ggplot2",
      "role": "Imports"
    },
    {
      "package": "readr",
      "role": "Imports"
    },
    {
      "package": "shiny",
      "role": "Imports"
    },
    {
      "package": "shinythemes",
      "role": "Imports"
    },
    {
      "package": "ggrepel",
      "role": "Imports"
    },
    {
      "package": "LaplacesDemon",
      "role": "Imports"
    },
    {
      "package": "here",
      "role": "Imports"
    },
    {
      "package": "stats",
      "role": "Imports"
    },
    {
      "package": "methods",
      "role": "Imports"
    },
    {
      "package": "tibble",
      "role": "Imports"
    },
    {
      "package": "grid",
      "role": "Imports"
    },
    {
      "package": "magrittr",
      "role": "Imports"
    },
    {
      "package": "dplyr",
      "role": "Imports"
    },
    {
      "package": "rlang",
      "role": "Imports"
    },
    {
      "package": "tidyselect",
      "role": "Imports"
    },
    {
      "package": "stringr",
      "role": "Imports"
    },
    {
      "package": "testthat",
      "role": "Suggests"
    },
    {
      "package": "knitr",
      "role": "Suggests"
    },
    {
      "package": "rmarkdown",
      "role": "Suggests"
    }
  ],
  "_owner": "moshejasper",
  "_selfowned": true,
  "_usedby": 0,
  "_updates": [],
  "_tags": [],
  "_stars": 2,
  "_contributors": [
    {
      "user": "moshejasper",
      "count": 238,
      "uuid": 54789898
    }
  ],
  "_userbio": {
    "uuid": 54789898,
    "type": "user",
    "name": "Moshe Jasper",
    "description": "I'm a PhD student focused on population genetics at the University of Melbourne"
  },
  "_downloads": {
    "count": 233,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/kindisperse"
  },
  "_devurl": "https://github.com/moshejasper/kindisperse",
  "_searchresults": 5,
  "_rbuild": "4.6.0",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/kindisperse.html",
    "extra/NEWS.html",
    "extra/NEWS.txt",
    "extra/readme.html",
    "extra/readme.md",
    "manual.pdf"
  ],
  "_homeurl": "https://github.com/moshejasper/kindisperse",
  "_realowner": "moshejasper",
  "_cranurl": true,
  "_releases": [
    {
      "version": "0.9.2",
      "date": "2021-03-31"
    },
    {
      "version": "0.10.1",
      "date": "2021-07-17"
    },
    {
      "version": "0.10.2",
      "date": "2021-07-28"
    }
  ],
  "_exports": [
    "axials",
    "axials_add",
    "axials_combine",
    "axials_decompose",
    "axials_standard",
    "axials_subtract",
    "axpermute",
    "axpermute_standard",
    "axpermute_subtract",
    "breeding_cycle",
    "breeding_stage",
    "breedsigma",
    "breedsigma<-",
    "csv_to_kinpair",
    "df_to_kinpair",
    "dispersal_model",
    "dispersal_vector",
    "DispersalModel",
    "display_appdata",
    "distances",
    "elongate",
    "filtertype",
    "filtertype<-",
    "fs",
    "get_dispersal_model",
    "gravsigma",
    "gravsigma<-",
    "hs",
    "initialize",
    "initsigma",
    "initsigma<-",
    "is.DispersalModel",
    "is.KinPairData",
    "is.KinPairSimulation",
    "kernelshape",
    "kerneltype",
    "kerneltype<-",
    "kin_pair_data",
    "kin_pair_simulation",
    "kinpair_to_csv",
    "kinpair_to_tibble",
    "kinpair_to_tsv",
    "KinPairData",
    "KinPairSimulation",
    "KinPairSimulation_composite",
    "KinPairSimulation_custom",
    "KinPairSimulation_simple",
    "kinship",
    "kinship<-",
    "lifestage",
    "lifestage<-",
    "lower",
    "lower<-",
    "mount_appdata",
    "ovisigma",
    "ovisigma<-",
    "posigma",
    "posigma<-",
    "read_kindata",
    "rebase_dims",
    "reset_appdata",
    "reset_tempdata",
    "retrieve_appdata",
    "retrieve_tempdata",
    "retrieveall_appdata",
    "run_kindisperse",
    "sample_kindist",
    "sampledims",
    "sampledims<-",
    "samplenum",
    "samplenum<-",
    "sampling_stage",
    "sampling_stage<-",
    "show",
    "simdims",
    "simdims<-",
    "simgraph_data",
    "simgraph_graph",
    "simtype",
    "simtype<-",
    "simulate_kindist_composite",
    "simulate_kindist_custom",
    "simulate_kindist_simple",
    "spacing",
    "spacing<-",
    "stages",
    "tsv_to_kinpair",
    "unmount_appdata",
    "upper",
    "upper<-",
    "vector_to_kinpair",
    "visible_stage",
    "write_kindata"
  ],
  "_datasets": [
    {
      "name": "mentari",
      "title": "Position & kinship information of _Aedes aegypti_ from Mentari Court, Malaysia",
      "object": "mentari",
      "class": [
        "spec_tbl_df",
        "tbl_df",
        "tbl",
        "data.frame"
      ],
      "fields": [
        "id1",
        "id2",
        "kinship",
        "distance",
        "x1",
        "y1",
        "x2",
        "y2",
        "lifestage",
        "k_loiselle"
      ],
      "rows": 98,
      "table": true,
      "tojson": true
    }
  ],
  "_help": [
    {
      "page": "access_sigmas",
      "title": "Access or assign dispersal sigmas of 'KinPairSimulation' objects",
      "concept": [
        "kpsmethods"
      ],
      "topics": [
        "access_sigmas",
        "breedsigma",
        "breedsigma,KinPairSimulation-method",
        "breedsigma<-",
        "gravsigma",
        "gravsigma,KinPairSimulation-method",
        "gravsigma<-",
        "initsigma",
        "initsigma,KinPairSimulation-method",
        "initsigma<-",
        "ovisigma",
        "ovisigma,KinPairSimulation-method",
        "ovisigma<-",
        "posigma",
        "posigma,KinPairSimulation-method",
        "posigma<-"
      ]
    },
    {
      "page": "axials",
      "title": "Estimate the axial dispersal distance of a kernel",
      "concept": [
        "axial_helpers"
      ],
      "topics": [
        "axials"
      ]
    },
    {
      "page": "axials_add",
      "title": "Add axial distributions",
      "concept": [
        "axial_helpers"
      ],
      "topics": [
        "axials_add"
      ]
    },
    {
      "page": "axials_combine",
      "title": "Combine axial distributions to produce a mixed distribution",
      "topics": [
        "axials_combine"
      ]
    },
    {
      "page": "axials_decompose",
      "title": "Decompose an axial distribution into simple components",
      "concept": [
        "axial_helpers"
      ],
      "topics": [
        "axials_decompose"
      ]
    },
    {
      "page": "axials_standard",
      "title": "Calculate the intergenerational (PO) dispersal kernel from the distributions of close kin",
      "concept": [
        "axstandard"
      ],
      "topics": [
        "axials_standard"
      ]
    },
    {
      "page": "axials_subtract",
      "title": "Subtract axial distributions",
      "concept": [
        "axial_helpers"
      ],
      "topics": [
        "axials_subtract"
      ]
    },
    {
      "page": "axpermute",
      "title": "Estimate the axial dispersal distance of a kernel with confidence intervals",
      "concept": [
        "axial_helpers"
      ],
      "topics": [
        "axpermute"
      ]
    },
    {
      "page": "axpermute_standard",
      "title": "Calculate the intergenerational (PO) dispersal kernel from the distributions of close kin (bootstrapped)",
      "concept": [
        "axstandard"
      ],
      "topics": [
        "axpermute_standard"
      ]
    },
    {
      "page": "axpermute_subtract",
      "title": "Subtract axial distributions with confidence intervals",
      "concept": [
        "axial_helpers"
      ],
      "topics": [
        "axpermute_subtract"
      ]
    },
    {
      "page": "breeding_cycle",
      "title": "Access breeding cycle at sampling of 'DispersalModel' object.",
      "topics": [
        "breeding_cycle",
        "breeding_cycle,DispersalModel-method",
        "breeding_cycle,KinPairData-method"
      ]
    },
    {
      "page": "breeding_stage",
      "title": "Access life stage at which breeding occurs of 'DispersalModel' object",
      "topics": [
        "breeding_stage",
        "breeding_stage,DispersalModel-method"
      ]
    },
    {
      "page": "check_valid_kinship",
      "title": "Check valid kinship",
      "topics": [
        "check_valid_kinship"
      ]
    },
    {
      "page": "check_valid_lifestage",
      "title": "Check valid lifestage",
      "topics": [
        "check_valid_lifestage"
      ]
    },
    {
      "page": "csv_to_kinpair",
      "title": "Reads '.csv' and converts to 'KinPairData' object",
      "concept": [
        "import_functions"
      ],
      "topics": [
        "csv_to_kinpair"
      ]
    },
    {
      "page": "df_to_kinpair",
      "title": "Convert dataframe or tibble to 'KinPairData' class",
      "concept": [
        "import_functions"
      ],
      "topics": [
        "df_to_kinpair"
      ]
    },
    {
      "page": "dispersal_model",
      "title": "Create Dispersal Model of an Organism",
      "topics": [
        "dispersal_model"
      ]
    },
    {
      "page": "dispersal_vector",
      "title": "Access dispersal vector of 'DispersalModel' object.",
      "topics": [
        "dispersal_vector",
        "dispersal_vector,DispersalModel-method"
      ]
    },
    {
      "page": "DispersalModel-class",
      "title": "DispersalModel Class",
      "concept": [
        "kdclasses"
      ],
      "topics": [
        "DispersalModel",
        "DispersalModel-class",
        "initialize,DispersalModel-method",
        "show,DispersalModel-method"
      ]
    },
    {
      "page": "display_appdata",
      "title": "Show printout of named items stored in appdata.",
      "concept": [
        "app_ports"
      ],
      "topics": [
        "display_appdata"
      ]
    },
    {
      "page": "distances",
      "title": "Access or assign 'distances' category of 'KinPairData' class objects",
      "concept": [
        "kpdmethods"
      ],
      "topics": [
        "distances",
        "distances,KinPairData-method"
      ]
    },
    {
      "page": "elongate",
      "title": "Change the shape (aspect ratio) of a rectangle while preserving area",
      "topics": [
        "elongate"
      ]
    },
    {
      "page": "filter_methods",
      "title": "Access or modify the 'filter' parameters of 'KinPairSimulation' objects",
      "concept": [
        "kpsmethods"
      ],
      "topics": [
        "filter_methods",
        "lower",
        "lower,KinPairSimulation-method",
        "lower<-",
        "lower<-,KinPairSimulation-method",
        "sampledims",
        "sampledims,KinPairSimulation-method",
        "sampledims<-",
        "sampledims<-,KinPairSimulation-method",
        "samplenum",
        "samplenum,KinPairSimulation-method",
        "samplenum<-",
        "samplenum<-,KinPairSimulation-method",
        "spacing",
        "spacing,KinPairSimulation-method",
        "spacing<-",
        "spacing<-,KinPairSimulation-method",
        "upper",
        "upper,KinPairSimulation-method",
        "upper<-",
        "upper<-,KinPairSimulation-method"
      ]
    },
    {
      "page": "filtertype",
      "title": "Access filtertype of 'KinPairSimulation' object",
      "topics": [
        "filtertype",
        "filtertype,KinPairSimulation-method",
        "filtertype<-"
      ]
    },
    {
      "page": "fs",
      "title": "Access FS phase split point of 'DispersalModel' object.",
      "topics": [
        "fs",
        "fs,DispersalModel-method"
      ]
    },
    {
      "page": "get_dispersal_model",
      "title": "Access dispersal model of 'KinPairSimulation' object",
      "topics": [
        "get_dispersal_model",
        "get_dispersal_model,KinPairSimulation-method"
      ]
    },
    {
      "page": "hs",
      "title": "Access HS phase split point of 'DispersalModel' object.",
      "topics": [
        "hs",
        "hs,DispersalModel-method"
      ]
    },
    {
      "page": "is.DispersalModel",
      "title": "Check if object is of class 'DispersalModel'",
      "topics": [
        "is.DispersalModel"
      ]
    },
    {
      "page": "is.KinPairData",
      "title": "Check if object is of class KinPairData",
      "topics": [
        "is.KinPairData"
      ]
    },
    {
      "page": "is.KinPairSimulation",
      "title": "Check if object is of class KinPairSimulation",
      "topics": [
        "is.KinPairSimulation"
      ]
    },
    {
      "page": "kernelshape",
      "title": "Access kernel type of 'KinPairSimulation' object",
      "concept": [
        "kpsmethods"
      ],
      "topics": [
        "kernelshape",
        "kernelshape,KinPairSimulation-method"
      ]
    },
    {
      "page": "kerneltype",
      "title": "Access or assign kerneltype of 'KinPairSimulation' object",
      "concept": [
        "kpsmethods"
      ],
      "topics": [
        "kerneltype",
        "kerneltype,KinPairSimulation-method",
        "kerneltype<-"
      ]
    },
    {
      "page": "kin_pair_data",
      "title": "Make new KinPairData object",
      "topics": [
        "kin_pair_data"
      ]
    },
    {
      "page": "kin_pair_simulation",
      "title": "KinPairSimulation",
      "topics": [
        "kin_pair_simulation"
      ]
    },
    {
      "page": "kinpair_to_csv",
      "title": "Write 'KinPairData' object to '.csv' format",
      "concept": [
        "export_functions"
      ],
      "topics": [
        "kinpair_to_csv"
      ]
    },
    {
      "page": "kinpair_to_tibble",
      "title": "Extract KinPairData class object to tibble",
      "concept": [
        "export_functions"
      ],
      "topics": [
        "kinpair_to_tibble"
      ]
    },
    {
      "page": "kinpair_to_tsv",
      "title": "Write 'KinPairData' object to '.tsv' format",
      "concept": [
        "export_functions"
      ],
      "topics": [
        "kinpair_to_tsv"
      ]
    },
    {
      "page": "KinPairData-class",
      "title": "Formal class KinPairData",
      "concept": [
        "kdclasses"
      ],
      "topics": [
        "initialize,KinPairData-method",
        "KinPairData",
        "KinPairData-class",
        "show,KinPairData-method"
      ]
    },
    {
      "page": "KinPairSimulation_composite",
      "title": "Constructor for KinPairSimulation Class (composite)",
      "topics": [
        "KinPairSimulation_composite"
      ]
    },
    {
      "page": "KinPairSimulation_custom",
      "title": "Constructor for KinPairSimulation Class (custom)",
      "topics": [
        "KinPairSimulation_custom"
      ]
    },
    {
      "page": "KinPairSimulation_simple",
      "title": "Constructor for KinPairSimulation Class (simple)",
      "topics": [
        "KinPairSimulation_simple"
      ]
    },
    {
      "page": "KinPairSimulation-class",
      "title": "KinPairSimulation Class",
      "concept": [
        "kdclasses"
      ],
      "topics": [
        "initialize,KinPairSimulation-method",
        "KinPairSimulation",
        "KinPairSimulation-class",
        "show,KinPairSimulation-method"
      ]
    },
    {
      "page": "kinship",
      "title": "Access or assign 'kinship' category of 'KinPairData' class objects",
      "concept": [
        "kpdmethods"
      ],
      "topics": [
        "kinship",
        "kinship,KinPairData-method",
        "kinship<-",
        "kinship<-,KinPairData-method"
      ]
    },
    {
      "page": "lifestage",
      "title": "Access or assign 'lifestage' category of 'KinPairData' class objects",
      "concept": [
        "kpdmethods"
      ],
      "topics": [
        "lifestage",
        "lifestage,KinPairData-method",
        "lifestage<-",
        "lifestage<-,KinPairData-method"
      ]
    },
    {
      "page": "mentari",
      "title": "Position & kinship information of _Aedes aegypti_ from Mentari Court, Malaysia",
      "topics": [
        "mentari"
      ]
    },
    {
      "page": "mount_appdata",
      "title": "Mount 'KinPairData' Objects for use in kindisperse app",
      "concept": [
        "app_ports"
      ],
      "topics": [
        "mount_appdata"
      ]
    },
    {
      "page": "read_kindata",
      "title": "Reads '.kindata' filetype back to 'KinPairData' or 'KinPairSimulation' object.",
      "concept": [
        "import_functions"
      ],
      "topics": [
        "read_kindata"
      ]
    },
    {
      "page": "rebase_dims",
      "title": "Change the dimensions of a KinPairSimulation Object and shift kinpairs so at least one individual is within the area",
      "topics": [
        "rebase_dims"
      ]
    },
    {
      "page": "reset_appdata",
      "title": "Reset kindisperse appdata",
      "concept": [
        "app_ports"
      ],
      "topics": [
        "reset_appdata"
      ]
    },
    {
      "page": "reset_tempdata",
      "title": "Reset app tempdata (internal mem)",
      "concept": [
        "app_ports"
      ],
      "topics": [
        "reset_tempdata"
      ]
    },
    {
      "page": "retrieve_appdata",
      "title": "Retrieve 'KinPairData' object from appdata (single)",
      "concept": [
        "app_ports"
      ],
      "topics": [
        "retrieve_appdata"
      ]
    },
    {
      "page": "retrieve_tempdata",
      "title": "Retrieve all tempdata (internal mem) from app (as list)",
      "concept": [
        "app_ports"
      ],
      "topics": [
        "retrieve_tempdata"
      ]
    },
    {
      "page": "retrieveall_appdata",
      "title": "Retrieve all 'KinPairData' objects from appdata (as list)",
      "concept": [
        "app_ports"
      ],
      "topics": [
        "retrieveall_appdata"
      ]
    },
    {
      "page": "run_kindisperse",
      "title": "Run kindisperse app",
      "topics": [
        "run_kindisperse"
      ]
    },
    {
      "page": "sample_kindist",
      "title": "Subsample and filter a 'KinPairSimulation' or 'KinPairData' Object",
      "topics": [
        "sample_kindist"
      ]
    },
    {
      "page": "sampling_stage",
      "title": "Access sampling stage of 'DispersalModel' or 'KinPairSimulation' object.",
      "topics": [
        "sampling_stage",
        "sampling_stage,DispersalModel-method",
        "sampling_stage,KinPairData-method",
        "sampling_stage<-",
        "sampling_stage<-,DispersalModel-method"
      ]
    },
    {
      "page": "simdims",
      "title": "Access simulation dimensions of 'KinPairSimulation' object",
      "topics": [
        "simdims",
        "simdims,KinPairSimulation-method",
        "simdims<-"
      ]
    },
    {
      "page": "simgraph_data",
      "title": "Simple kin dispersal simulation for graphical display. (returns the data side as a tibble).",
      "concept": [
        "simgraph"
      ],
      "topics": [
        "simgraph_data"
      ]
    },
    {
      "page": "simgraph_graph",
      "title": "Simple kin dispersal simulation for graphical display. (graphs the pre-existing simulation).",
      "concept": [
        "simgraph"
      ],
      "topics": [
        "simgraph_graph"
      ]
    },
    {
      "page": "simtype",
      "title": "Access or assign simulation type of 'KinPairSimulation' object",
      "concept": [
        "kpsmethods"
      ],
      "topics": [
        "simtype",
        "simtype,KinPairSimulation-method",
        "simtype<-"
      ]
    },
    {
      "page": "simulate_kindist_composite",
      "title": "Simulate kin dispersal distance pairs with composite sigmas",
      "concept": [
        "simulate_kindist"
      ],
      "topics": [
        "simulate_kindist_composite"
      ]
    },
    {
      "page": "simulate_kindist_custom",
      "title": "Simulate kin dispersal distance pairs with custom species dispersal models.",
      "concept": [
        "simulate_kindist"
      ],
      "topics": [
        "simulate_kindist_custom"
      ]
    },
    {
      "page": "simulate_kindist_simple",
      "title": "Simulate kin dispersal distance pairs with simple sigma",
      "concept": [
        "simulate_kindist"
      ],
      "topics": [
        "simulate_kindist_simple"
      ]
    },
    {
      "page": "stages",
      "title": "Access breeding cycle stages of 'DispersalModel' object.",
      "topics": [
        "stages",
        "stages,DispersalModel-method"
      ]
    },
    {
      "page": "tsv_to_kinpair",
      "title": "Reads '.tsv' and converts to 'KinPairData' object",
      "concept": [
        "import_functions"
      ],
      "topics": [
        "tsv_to_kinpair"
      ]
    },
    {
      "page": "unmount_appdata",
      "title": "Unmount a 'KinPairData' Object (clear slot from appdata environment)",
      "concept": [
        "app_ports"
      ],
      "topics": [
        "unmount_appdata"
      ]
    },
    {
      "page": "vector_to_kinpair",
      "title": "Convert vector of kin separation distances to 'KinPairData' class",
      "concept": [
        "import_functions"
      ],
      "topics": [
        "vector_to_kinpair"
      ]
    },
    {
      "page": "visible_stage",
      "title": "Access life stage at which individual is first visible to sampling (i.e. from which breeding cycles are calculated)",
      "topics": [
        "visible_stage",
        "visible_stage,DispersalModel-method"
      ]
    },
    {
      "page": "write_kindata",
      "title": "Write 'KinPairData' or 'KinPairSimulation' object in '.kindata' format",
      "concept": [
        "export_functions"
      ],
      "topics": [
        "write_kindata"
      ]
    }
  ],
  "_readme": "https://github.com/moshejasper/kindisperse/raw/HEAD/README.md",
  "_rundeps": [
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    "bit64",
    "bslib",
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  "_vignettes": [
    {
      "source": "using-kindisperse.Rmd",
      "filename": "using-kindisperse.html",
      "title": "using-kindisperse",
      "author": "Moshe-Elijah Jasper",
      "engine": "knitr::rmarkdown",
      "headings": [
        "1. Introduction",
        "2. Installation",
        "3. The shiny app",
        "3.1 Running the app",
        "3.2 External interface",
        "4. The R package",
        "4.1 Simulations and Sampling",
        "4.1.1 Graphical simulations",
        "4.1.2 Kinpair Simulations",
        "4.1.3 Simulating Field Sampling of Kinship Distributions",
        "4.2 Data Management",
        "4.2.1 Reading and writing files",
        "4.2.2 Converting objects to KinPairData format",
        "4.3 Estimating dispersal",
        "4.3.1 Basic estimation of axial sigma",
        "4.3.2 Estimation of axial sigma of intergenerational (PO) dispersal",
        "4.4 Adapting to a new species: Antechinus",
        "4.4.1 Assemble known background information",
        "4.4.2 Identify useful life stages and kinship categories",
        "First order kinship",
        "Second order kinship",
        "Third order kinship",
        "4.4.3 Build a dispersal model",
        "4.4.4 Build a custom dispersal simulation",
        "4.4.5 Validate axial dispersal estimates and refine model",
        "4.4.6 Finalize target kinship categories",
        "4.4.7 Simulate sampling site and finalise study design",
        "4.4.8 Run the study!",
        "4.4.9 Load data and generate in-field dispersal estimates",
        "4.4.10 Cross-check field estimates for bias and calibrate",
        "5. References"
      ],
      "created": "2020-12-08 13:09:42",
      "modified": "2021-07-23 06:43:43",
      "commits": 12
    }
  ],
  "_score": 4,
  "_indexed": true,
  "_nocasepkg": "kindisperse",
  "_universes": [
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